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Hello
As the name suggest MCA deals in Computer Application that make it a perfectly technical application domain on the other hand MSc. IT deals into scientific concepts on Information technology.
MCA is preferred by employers in-terms of technical expertise.You should go through the curriculum and make sure that the core concepts like Data Structures and Algorithms, Operating Systems, Compilers,Theory of Automata Programming Languages are covered which are indispensable for anyone aspiring to be in the IT/ Software industry.
A lot depends on the infrastructure and faculty of the institution you select so it is quite possible that a university can offer you a better knowledge domain through MSc IT than they can in MCA.
For MCA you need to clear one or more than one entrance exams and the course duration will be 3 years . Also being a professional degree MCA is quite expensive as compared to MSc IT .
Analytically MCA will be you an edge over MSc. IT interms of initial salary and position in the industry .
All the best
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